Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G130200.2 |
Family | CBM43 |
Protein Properties | Length: 504 Molecular Weight: 54452.1 Isoelectric Point: 4.8759 |
Chromosome | Chromosome/Scaffold: 17 Start: 14088168 End: 14094513 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 450 | 8.5e-31 |
CTAKEGADPKMLQAALDWACGPGKVNCSAILQGEPCYEPDNVIAHATYAFNSYYSRMGKAPGTCDFNGVAAITTTNPSHGTC | |||
GH17 | 31 | 350 | 0 |
IGVNIGTDLSDMPHPTQVVALLKAQQIWHVRLYDADRGMLVALANTGIQVMVSVPNDQLLGIGQSNSTAANWVSHNIVAHYPATNITAICVGSEVFTTIP NAAPVLVNAMKYIQSALVASNLDRQIKVSTPLSSSIILDSFPPSQAFFNRSWNPVLIPMLNFLQSTGSHLMLNIYPYYDYMQSNGVIPLDYALMKPLAPT KEAVDANTLVHYSNVFDAMVDAAYFAMNFLNFTNIPVMVTESGWPSKGDTNEPDATLDNANTYNSNLIRHVLNKTGTPNHPGIAVSTYIYELYNEDLKPG PVSEKNWGLFNANGEPIYIL |
Full Sequence |
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Protein Sequence Length: 504 Download |
MFWKMESLFV LTLLVLVAEV SFVAADDEAF IGVNIGTDLS DMPHPTQVVA LLKAQQIWHV 60 RLYDADRGML VALANTGIQV MVSVPNDQLL GIGQSNSTAA NWVSHNIVAH YPATNITAIC 120 VGSEVFTTIP NAAPVLVNAM KYIQSALVAS NLDRQIKVST PLSSSIILDS FPPSQAFFNR 180 SWNPVLIPML NFLQSTGSHL MLNIYPYYDY MQSNGVIPLD YALMKPLAPT KEAVDANTLV 240 HYSNVFDAMV DAAYFAMNFL NFTNIPVMVT ESGWPSKGDT NEPDATLDNA NTYNSNLIRH 300 VLNKTGTPNH PGIAVSTYIY ELYNEDLKPG PVSEKNWGLF NANGEPIYIL HLTGAGLVLA 360 NDTTNQTYCT AKEGADPKML QAALDWACGP GKVNCSAILQ GEPCYEPDNV IAHATYAFNS 420 YYSRMGKAPG TCDFNGVAAI TTTNPSHGTC LFPGSTGKIN GFGNITAPSM NSTSSAPPAQ 480 NLYNLGSMSF LLLRVLICSI VFL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-8 | 263 | 343 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-19 | 367 | 438 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-39 | 367 | 452 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-88 | 31 | 348 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK85402.2 | 0 | 20 | 480 | 11 | 471 | beta-1,3-glucanase [Camellia sinensis] |
EMBL | CBI33479.1 | 0 | 23 | 503 | 14 | 494 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002301689.1 | 0 | 23 | 503 | 1 | 481 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002305879.1 | 0 | 28 | 503 | 14 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531922.1 | 0 | 27 | 503 | 30 | 504 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 31 | 352 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 31 | 352 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 31 | 352 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 31 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 31 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |