Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.017G130200.3 |
Family | CBM43 |
Protein Properties | Length: 482 Molecular Weight: 51941.1 Isoelectric Point: 5.4946 |
Chromosome | Chromosome/Scaffold: 17 Start: 14088168 End: 14090803 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 347 | 428 | 7.9e-31 |
CTAKEGADPKMLQAALDWACGPGKVNCSAILQGEPCYEPDNVIAHATYAFNSYYSRMGKAPGTCDFNGVAAITTTNPSHGTC | |||
GH17 | 9 | 328 | 0 |
IGVNIGTDLSDMPHPTQVVALLKAQQIWHVRLYDADRGMLVALANTGIQVMVSVPNDQLLGIGQSNSTAANWVSHNIVAHYPATNITAICVGSEVFTTIP NAAPVLVNAMKYIQSALVASNLDRQIKVSTPLSSSIILDSFPPSQAFFNRSWNPVLIPMLNFLQSTGSHLMLNIYPYYDYMQSNGVIPLDYALMKPLAPT KEAVDANTLVHYSNVFDAMVDAAYFAMNFLNFTNIPVMVTESGWPSKGDTNEPDATLDNANTYNSNLIRHVLNKTGTPNHPGIAVSTYIYELYNEDLKPG PVSEKNWGLFNANGEPIYIL |
Full Sequence |
---|
Protein Sequence Length: 482 Download |
MAKSQEAFIG VNIGTDLSDM PHPTQVVALL KAQQIWHVRL YDADRGMLVA LANTGIQVMV 60 SVPNDQLLGI GQSNSTAANW VSHNIVAHYP ATNITAICVG SEVFTTIPNA APVLVNAMKY 120 IQSALVASNL DRQIKVSTPL SSSIILDSFP PSQAFFNRSW NPVLIPMLNF LQSTGSHLML 180 NIYPYYDYMQ SNGVIPLDYA LMKPLAPTKE AVDANTLVHY SNVFDAMVDA AYFAMNFLNF 240 TNIPVMVTES GWPSKGDTNE PDATLDNANT YNSNLIRHVL NKTGTPNHPG IAVSTYIYEL 300 YNEDLKPGPV SEKNWGLFNA NGEPIYILHL TGAGLVLAND TTNQTYCTAK EGADPKMLQA 360 ALDWACGPGK VNCSAILQGE PCYEPDNVIA HATYAFNSYY SRMGKAPGTC DFNGVAAITT 420 TNPSHGTCLF PGSTGKINGF GNITAPSMNS TSSAPPAQNL YNLGSMSFLL LRVLICSIVF 480 L* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-8 | 241 | 321 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-19 | 345 | 416 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-39 | 345 | 430 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-88 | 9 | 326 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK85402.2 | 0 | 5 | 458 | 18 | 471 | beta-1,3-glucanase [Camellia sinensis] |
EMBL | CBI33479.1 | 0 | 1 | 481 | 14 | 494 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002301689.1 | 0 | 1 | 481 | 1 | 481 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002305879.1 | 0 | 6 | 481 | 14 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531922.1 | 0 | 5 | 480 | 30 | 508 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 9 | 330 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 9 | 330 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 9 | 330 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 9 | 330 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 9 | 330 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EX302541 | 307 | 7 | 313 | 0 |
DR951683 | 294 | 52 | 345 | 0 |
GE476981 | 314 | 80 | 393 | 0 |
HS258579 | 257 | 66 | 322 | 0 |
HS013357 | 257 | 66 | 322 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|