Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s51_57V6.2 |
Family | CBM43 |
Protein Properties | Length: 527 Molecular Weight: 56473.6 Isoelectric Point: 7.4375 |
Chromosome | Chromosome/Scaffold: 51 Start: 377423 End: 380553 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 428 | 507 | 4e-31 |
WCVAKPGSSERDVANALNFACGEGGADCGTIQPGGPCYNPNTLLSHASFAFNVYYQKMGRNYWNCYFGGTGVITITDPST | |||
GH17 | 37 | 352 | 0 |
VGVNYGTLGNNLPTPSQVAQLLLSTSLRNVKIYNADKAIMEAFANTNIRLVVGIGTESIPLLASSPAAAQSWVQSNIAAHMPATQVTALAVGNEVFTTSP QMSSQLVPAMMNIHTALVNLKLDTIKVGTPHNLQVLQKSFPPSSGTFRANISNELKSLLAFLSTTNNPIMINFYPYFAYRDDPKNVSLNYALFQPDTGVT DVNTGLHYDNMLDAQLDAVYSAMERFGYHNIPVLISETGWPSSGDPTEIAASATNAQIYNQNLLKYIASNKGTPLRPSSSVDAYIFALFNENMKPGPGSE RFFGLFNADKSLVYNL |
Full Sequence |
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Protein Sequence Length: 527 Download |
MKRMVMVAMH RMSCIKLAVV LLACFSVPQA DCTGGSVGVN YGTLGNNLPT PSQVAQLLLS 60 TSLRNVKIYN ADKAIMEAFA NTNIRLVVGI GTESIPLLAS SPAAAQSWVQ SNIAAHMPAT 120 QVTALAVGNE VFTTSPQMSS QLVPAMMNIH TALVNLKLDT IKVGTPHNLQ VLQKSFPPSS 180 GTFRANISNE LKSLLAFLST TNNPIMINFY PYFAYRDDPK NVSLNYALFQ PDTGVTDVNT 240 GLHYDNMLDA QLDAVYSAME RFGYHNIPVL ISETGWPSSG DPTEIAASAT NAQIYNQNLL 300 KYIASNKGTP LRPSSSVDAY IFALFNENMK PGPGSERFFG LFNADKSLVY NLGIVTNTYP 360 PATATPPYVS PISPTPVLYP PPPTPVFPPP LPSIPPPVYS PPVSPVVTPV HPAPYTAPAQ 420 GGNPGKTWCV AKPGSSERDV ANALNFACGE GGADCGTIQP GGPCYNPNTL LSHASFAFNV 480 YYQKMGRNYW NCYFGGTGVI TITDPSTSLK IRTFRQFPCE EVDIVG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-7 | 197 | 346 | 154 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 9.0e-22 | 427 | 499 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-38 | 427 | 508 | 82 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-95 | 37 | 352 | 317 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK24319.1 | 0 | 20 | 506 | 16 | 482 | unknown [Picea sitchensis] |
GenBank | ABK25242.1 | 0 | 11 | 506 | 4 | 482 | unknown [Picea sitchensis] |
RefSeq | XP_001752749.1 | 0 | 35 | 506 | 7 | 433 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001761806.1 | 0 | 26 | 526 | 23 | 471 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001772420.1 | 0 | 1 | 508 | 1 | 511 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 37 | 352 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 37 | 352 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 37 | 352 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 36 | 352 | 1 | 313 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 36 | 352 | 1 | 313 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |