Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s6_62V6.2 |
Family | CBM43 |
Protein Properties | Length: 495 Molecular Weight: 52069.1 Isoelectric Point: 5.8605 |
Chromosome | Chromosome/Scaffold: 6 Start: 947035 End: 950381 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 412 | 490 | 1.1e-27 |
WCVAKAGAPEQDMLNALNYACGVGTTDCSAIQPGAMCYFPNTLVAHASFAFNEYYHKFGANYYNCYFNGTAIISNSDPR | |||
GH17 | 25 | 341 | 0 |
IGVNYGVLGNNLPTPAATTKLILSTTIRNVKLYNTDPATLQSFANTGIKVIVSAGNDNIPLLASSLASSQSWVQTNVAAYMPATQIIAIALGNEVLMTNP ELAGQLVTALVNVHTSLVNLKLDATVKVSSPQSLGVLSKSYPPSQGVFKENFTSTFKDLLSFHQQTMSPLMVNAYPYFAYTATPNNVSVNYALFQTNAGV TDLNTGLHYGNILDAQLDAVYSAMASLGYTDVNLLVSETGWPSGGGPDEIGASVPFAQLYNENLIQHITLNTGTPLRPNASIDTYIFALYNENLKPGAVS ERFYGLFNVDQSPVYNV |
Full Sequence |
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Protein Sequence Length: 495 Download |
MKLFHFISFL SCLAACIPLS GAGTIGVNYG VLGNNLPTPA ATTKLILSTT IRNVKLYNTD 60 PATLQSFANT GIKVIVSAGN DNIPLLASSL ASSQSWVQTN VAAYMPATQI IAIALGNEVL 120 MTNPELAGQL VTALVNVHTS LVNLKLDATV KVSSPQSLGV LSKSYPPSQG VFKENFTSTF 180 KDLLSFHQQT MSPLMVNAYP YFAYTATPNN VSVNYALFQT NAGVTDLNTG LHYGNILDAQ 240 LDAVYSAMAS LGYTDVNLLV SETGWPSGGG PDEIGASVPF AQLYNENLIQ HITLNTGTPL 300 RPNASIDTYI FALYNENLKP GAVSERFYGL FNVDQSPVYN VGLTGGSTRN PPPAAPSPVG 360 GVASPPLQTP SMPLPPNSQP LPPLASAPPP LSVPSSPAPP AAPSTSPQGK TWCVAKAGAP 420 EQDMLNALNY ACGVGTTDCS AIQPGAMCYF PNTLVAHASF AFNEYYHKFG ANYYNCYFNG 480 TAIISNSDPR CTFA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0001 | 18 | 334 | 336 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-18 | 411 | 483 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-31 | 411 | 493 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-89 | 25 | 341 | 317 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK24319.1 | 0 | 1 | 489 | 5 | 481 | unknown [Picea sitchensis] |
GenBank | ABK25242.1 | 0 | 1 | 489 | 5 | 481 | unknown [Picea sitchensis] |
RefSeq | XP_001752749.1 | 0 | 20 | 489 | 4 | 432 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001761806.1 | 0 | 4 | 489 | 18 | 450 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001772420.1 | 0 | 1 | 358 | 15 | 367 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 25 | 341 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 25 | 341 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 25 | 341 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 25 | 343 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 25 | 343 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |