Basic Information | |
---|---|
Species | Physcomitrella patens |
Cazyme ID | Pp1s85_128V6.1 |
Family | CBM43 |
Protein Properties | Length: 506 Molecular Weight: 53031.3 Isoelectric Point: 5.4934 |
Chromosome | Chromosome/Scaffold: 85 Start: 933847 End: 935741 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 412 | 491 | 8.7e-27 |
WCVAKAGSSNSSLQQGLDWACGVGKAKCDPIQPGGACYLPNTLVSHASYVFNIHYHFFQSDQRACIFGGDAELTNVDPSE | |||
GH17 | 32 | 350 | 0 |
IGAVYGRNGNNIPSASAAAALMQENTITRVRIYDHDKDVLKAFASTQVRVIIAVTNDEISDIASGSSGADAWVSKNISPYIQNTNINAIAVGNEVLISNP SLAAMLVPAMHNLHDALMKQGYNSVKVSAPHGLGILEISYPPSAGIFFDSLQGVLQPMLDFLDSTGSFFMLNVYPYYLYVNNVNSISLDYALFSTDKPVV DGTTSLQYFSLYDAQVDAVVSAMAKLNHSTLGIVVTETGWPSDGDPTNEPAANYYNAKIYNQNLVIRSMNNSGTPLRPGTEIPAYIASLYDENLRYSPPV SNTHWGLFYTNGSSKYDFD |
Full Sequence |
---|
Protein Sequence Length: 506 Download |
MPWAKCPCVK LNHLTVVLLC LVYSTLTVAH SIGAVYGRNG NNIPSASAAA ALMQENTITR 60 VRIYDHDKDV LKAFASTQVR VIIAVTNDEI SDIASGSSGA DAWVSKNISP YIQNTNINAI 120 AVGNEVLISN PSLAAMLVPA MHNLHDALMK QGYNSVKVSA PHGLGILEIS YPPSAGIFFD 180 SLQGVLQPML DFLDSTGSFF MLNVYPYYLY VNNVNSISLD YALFSTDKPV VDGTTSLQYF 240 SLYDAQVDAV VSAMAKLNHS TLGIVVTETG WPSDGDPTNE PAANYYNAKI YNQNLVIRSM 300 NNSGTPLRPG TEIPAYIASL YDENLRYSPP VSNTHWGLFY TNGSSKYDFD YITGFSTRGG 360 GGGSGGGGGG SGGGGGGSGG GGGGSGGGGG GSGGGGSQTP GTSPRSSSEK VWCVAKAGSS 420 NSSLQQGLDW ACGVGKAKCD PIQPGGACYL PNTLVSHASY VFNIHYHFFQ SDQRACIFGG 480 DAELTNVDPS EFDVFFLPLC SHLLT* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-14 | 412 | 482 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-28 | 412 | 490 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-68 | 32 | 351 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001761806.1 | 0 | 31 | 490 | 33 | 451 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001766544.1 | 0 | 28 | 505 | 7 | 444 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001771454.1 | 0 | 29 | 498 | 9 | 465 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002316783.1 | 0 | 29 | 489 | 1 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525335.1 | 0 | 29 | 501 | 21 | 469 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 31 | 351 | 1 | 315 | A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices |
PDB | 3f55_C | 0 | 31 | 351 | 1 | 315 | A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices |
PDB | 3f55_B | 0 | 31 | 351 | 1 | 315 | A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices |
PDB | 3f55_A | 0 | 31 | 351 | 1 | 315 | A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices |
PDB | 3em5_D | 0 | 31 | 351 | 1 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |