Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s98_31V6.1 |
Family | CBM43 |
Protein Properties | Length: 490 Molecular Weight: 52444.8 Isoelectric Point: 7.2159 |
Chromosome | Chromosome/Scaffold: 98 Start: 193068 End: 196261 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 368 | 450 | 6.4e-33 |
WCVAKQDASQDALQAALDYACGLGQADCLPIQPGQACFLPNTRTSHASWAINSYYQKNSNSANACNFQGTATLTTKDPSYTAC | |||
GH17 | 28 | 346 | 0 |
IGVNYGTYGDNLPTPTQAVALLKKSGVTQARIYDTNPSVLNAFQGSNIQLVVGVRNDEIVAIGQDNATAYKWVNDHIVPYASKCNITAIAVGNEVLSYES SQAVMLLPAMKLIHTALVSYSLDSMMKVTTPMSADLLVSKFPPSIGAFSANLTKTTLVPMLDFLSAIGSFYFLNVYPHKEYQHGQTNISLEFALFQNNPG VVDSATGFLYTNAFDSLLDATYAALAKLNHTDLTIVVSETGWPSQGEAYEKGLSPSNAQTYNANLVKHVLSKVGSPGRPGVLIITYIYELFNEDKRQGPL STRSMGLFSAEMAPVYAVD |
Full Sequence |
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Protein Sequence Length: 490 Download |
MAVRVAHMMR IFQAISIFIL ISSAEASIGV NYGTYGDNLP TPTQAVALLK KSGVTQARIY 60 DTNPSVLNAF QGSNIQLVVG VRNDEIVAIG QDNATAYKWV NDHIVPYASK CNITAIAVGN 120 EVLSYESSQA VMLLPAMKLI HTALVSYSLD SMMKVTTPMS ADLLVSKFPP SIGAFSANLT 180 KTTLVPMLDF LSAIGSFYFL NVYPHKEYQH GQTNISLEFA LFQNNPGVVD SATGFLYTNA 240 FDSLLDATYA ALAKLNHTDL TIVVSETGWP SQGEAYEKGL SPSNAQTYNA NLVKHVLSKV 300 GSPGRPGVLI ITYIYELFNE DKRQGPLSTR SMGLFSAEMA PVYAVDLSGS QVTQVPIGPP 360 AASATRTWCV AKQDASQDAL QAALDYACGL GQADCLPIQP GQACFLPNTR TSHASWAINS 420 YYQKNSNSAN ACNFQGTATL TTKDPSYTAC VYPSNTHLAS GQRSAAKYLA PKVIILLSSA 480 ALALCFSTR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-13 | 367 | 439 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-28 | 367 | 452 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-85 | 28 | 346 | 319 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08070.1 | 0 | 7 | 453 | 4 | 445 | Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold; X8 [Medicago truncatula] |
GenBank | ACN39797.1 | 0 | 31 | 454 | 30 | 472 | unknown [Picea sitchensis] |
RefSeq | XP_001751439.1 | 0 | 26 | 446 | 2 | 418 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001767901.1 | 0 | 1 | 489 | 1 | 489 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784088.1 | 0 | 20 | 478 | 1 | 458 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 28 | 347 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 27 | 348 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 27 | 348 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 27 | 348 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 27 | 348 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |