Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna01212.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 478 Molecular Weight: 52004.6 Isoelectric Point: 5.638 |
Chromosome | Chromosome/Scaffold: 6 Start: 31421511 End: 31424067 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 390 | 473 | 1.9e-33 |
WCVANGEAGEEKLQAALDYACGEGGADCHQIQPGSTCYDPNTLEAHASYAFNSYYQKKARGAGTCYFGGAAYVVSQLPKYGKCE | |||
GH17 | 27 | 346 | 0 |
VGVNYGRVADNLPSAYKVAALIKSQGLERVKVFDSDPAVLRALSGSGIKVTVDLPNELLSSAAKTQMFATNWVQRNVVAYHPNTQIEAIAVGNEVFVDTH NTTKYLIAAMKNIHTALVKFNLASDIKVSSPIALSALQNSYPSSAGSFRPELIQPVFKPMLDFLRQTGSYLMVNAYPYFAYESNADVISLDYALFRENPG VVDAGSGLRYFSLFDAQIDAVFAAMSALKYNDIEMVVSETGWPSKGDENEIGASIENAAAYNGNLVRRILTGGGTPLRPKADLTVYLFALFNEDRKFGPT SERNYGLFFPNEKKVYDIPF |
Full Sequence |
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Protein Sequence Length: 478 Download |
MSITEMWMFL DFNLNQNFFF TQNAGSVGVN YGRVADNLPS AYKVAALIKS QGLERVKVFD 60 SDPAVLRALS GSGIKVTVDL PNELLSSAAK TQMFATNWVQ RNVVAYHPNT QIEAIAVGNE 120 VFVDTHNTTK YLIAAMKNIH TALVKFNLAS DIKVSSPIAL SALQNSYPSS AGSFRPELIQ 180 PVFKPMLDFL RQTGSYLMVN AYPYFAYESN ADVISLDYAL FRENPGVVDA GSGLRYFSLF 240 DAQIDAVFAA MSALKYNDIE MVVSETGWPS KGDENEIGAS IENAAAYNGN LVRRILTGGG 300 TPLRPKADLT VYLFALFNED RKFGPTSERN YGLFFPNEKK VYDIPFTVEG LKNYHDHKSP 360 VSGNHHETAP VTAPVTGSGD VSKTLTGNTW CVANGEAGEE KLQAALDYAC GEGGADCHQI 420 QPGSTCYDPN TLEAHASYAF NSYYQKKARG AGTCYFGGAA YVVSQLPKYG KCELPMS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK13498 | PRK13498 | 0.007 | 58 | 143 | 106 | + chemoreceptor glutamine deamidase CheD; Provisional | ||
COG5309 | COG5309 | 7.0e-5 | 65 | 322 | 261 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-25 | 389 | 461 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-40 | 389 | 472 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-103 | 27 | 346 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 27 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 27 | 347 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 27 | 347 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 27 | 347 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 27 | 347 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
Sequence Alignments (This image is cropped. Click for full image.) |
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