Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna08835.1-v1.0-hybrid |
Family | GT47 |
Protein Properties | Length: 1184 Molecular Weight: 134928 Isoelectric Point: 8.1689 |
Chromosome | Chromosome/Scaffold: 2 Start: 20426236 End: 20431659 |
Description | Exostosin family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 332 | 613 | 0 |
NTLKVYVYREGQRPIMHTPVLKGIYASEGWFMKQLEDHKKFVTKDPQKAHLYYLPFSSRMLEERLYVQNSHSRKNLVQYLKDYLDMIASKYPFWNRTGGA DHFLVACHDWAPAETKEYMDKCIRSLCNADMKEGFVFGKDVSLPETYVQNARNPLRDLGGNRPSKRTTLAFFAGSLHGYVRPILLQHWENKDPDMKIFGK LPKIKGNKNYVRHMKSSKYCICAKGYEVNSPRVVEAIFYECVPVIISDNFVPPFFEVLKWESFAVFVLEKDIPNLKSILLSI | |||
GT47 | 854 | 1134 | 0 |
STLKVYIYSEGERPIMHTPVLKGIYGSEGWFMKQLQDHKKFVTKDPQKAHLYYLPFSSVMLEEKLYVPNSHSFKNFIEYLKNYIDLIAGKYSFWNRAGGA DHFLVACHDWAPTETKKYMSKCIRSLCNADMKEGFVFGKDVSLPETSVHVKNPLTNLGGNPPSQRPILAFFAGKMHGYVRPILLQNWENKDPDMKIFGRL PRGKGNKNYVHHMKSSKYCICARGYEVNSPRVVEAIFYECVPVIISDNFVPPFFEVLNWESFAVFISEKDIPNLKNILLSI |
Full Sequence |
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Protein Sequence Length: 1184 Download |
MGQELFSFCP TEARRLLWIV GMLFALILVL QHLELPYGSH LSSVLSARQV PVENNSSSRA 60 RDPSSNVNMV GNESIINRLD DTGTYPSHEI ASNNKTSDSV SDSSKGSERT LEIDEDEDES 120 GSLVKQNTTL NENNVKNSET DTAQWGREPE NLVKDNSTDI TLSKVRTENE SSTTDPGGNS 180 NAGFPTTPHA YPPVVVETDA RAPIISVDSN VTLAERDQTP SPEKTENSEQ LHGGLNETGK 240 DSSVTRVPVV IKVPELSTLD VYTISDMNKL LHHSRTLYHS VIPQWSSSAD QEMQDAASQI 300 ENAPIIKNDP NLYAPLYRNV SMFKRSYELM ENTLKVYVYR EGQRPIMHTP VLKGIYASEG 360 WFMKQLEDHK KFVTKDPQKA HLYYLPFSSR MLEERLYVQN SHSRKNLVQY LKDYLDMIAS 420 KYPFWNRTGG ADHFLVACHD WAPAETKEYM DKCIRSLCNA DMKEGFVFGK DVSLPETYVQ 480 NARNPLRDLG GNRPSKRTTL AFFAGSLHGY VRPILLQHWE NKDPDMKIFG KLPKIKGNKN 540 YVRHMKSSKY CICAKGYEVN SPRVVEAIFY ECVPVIISDN FVPPFFEVLK WESFAVFVLE 600 KDIPNLKSIL LSIPKKRYLQ MQMRVKRVQQ HFLWHAKPEK ETRRLLWIVG TMFAVLVVLR 660 RLHPLSSVFS VKKVPVEGNT GFQAGDPPSN VDMVGNVSAS NDLNYTATYA SHEIANTSTS 720 SFVSEESGGL DRTIDIGVHN ISVQSNGTLE EKDGTTSSDE KTKNFEHTDL NRTRNSSPVT 780 RVPEVNKGSG VPSPMLECNS STEILQILIL ITVSISCLFV ADRNAPLIEN DPKLYAPLYR 840 NLSMFKRSYE LMESTLKVYI YSEGERPIMH TPVLKGIYGS EGWFMKQLQD HKKFVTKDPQ 900 KAHLYYLPFS SVMLEEKLYV PNSHSFKNFI EYLKNYIDLI AGKYSFWNRA GGADHFLVAC 960 HDWAPTETKK YMSKCIRSLC NADMKEGFVF GKDVSLPETS VHVKNPLTNL GGNPPSQRPI 1020 LAFFAGKMHG YVRPILLQNW ENKDPDMKIF GRLPRGKGNK NYVHHMKSSK YCICARGYEV 1080 NSPRVVEAIF YECVPVIISD NFVPPFFEVL NWESFAVFIS EKDIPNLKNI LLSIPEKRYL 1140 QMQMRVKRVQ QHFLWHVKPE KYDIFHMILH SIWYNRLYHI KSR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 8.0e-69 | 334 | 613 | 300 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
pfam03016 | Exostosin | 6.0e-69 | 852 | 1134 | 303 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |