Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna31119.1-v1.0-hybrid |
Family | GT47 |
Protein Properties | Length: 1034 Molecular Weight: 119169 Isoelectric Point: 8.5026 |
Chromosome | Chromosome/Scaffold: 1 Start: 2626085 End: 2631780 |
Description | Exostosin family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 149 | 434 | 0 |
KRFKMWSYEEGEQPLVHFGPMNNIYGIEGHFIDEIEREGSPFRATHPDEAHMFFLPFSVANIVQYVYLPITKKQDYHRDRLQQIAMDYIGVVAHKYPYWN RSKGADHFMASCHDWAPEISVGKPELFRNFIRVLCNANTSEGFQPKRDVPLPEIFVPTGKLGPPNLGQAPNNRQILAFFAGRVHGPIRPILLEHWKDKDN EVRVHEKLPKGMNYTKLMGQSKFCLCPSGFEVASPRVVEALYAGCVPVLISDNYSLPFSDVLDWSQFSIQVPVAKIPEIKTILQAI | |||
GT47 | 577 | 858 | 0 |
KRFKVWTYKEGQLPLTHVGPMDCIYSIEGHFIDEMGNGKSPFMAQHHHEAHAYFIPVSVVNIVKYIYMPVTDWHRRRMVRVVKDYVNLIADRYPHWNRSK GADHFMLSCHDWAPGVTKDDPELYENFMRVLCNANTSEGFKPMRDISVPEYNILDKEKLNSFTLGQPPSNRSILGFFAGGKAHGDIRPLLFEHWENKDDE ILVYEKVPDYNKMMEQSKFCLCPSGWEVASPRIIESLQAGCVPMIISDNYTLPFNDVLDWSKFSMFIPSSRIPEIKTILKGV |
Full Sequence |
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Protein Sequence Length: 1034 Download |
MTGSFRYPAV FLLITLFCLL FFLLIFTPLS SGNYLSISLV SSFTEPFANP EKSSNYSTPS 60 STQVASLDEA LTSSMYRRIR HRVNSTKEKT SLERIEEDLA KARASILEAI QSKNYSSEKE 120 ESFIPRGSIY KNPYAFHQLS FTSHLEMMKR FKMWSYEEGE QPLVHFGPMN NIYGIEGHFI 180 DEIEREGSPF RATHPDEAHM FFLPFSVANI VQYVYLPITK KQDYHRDRLQ QIAMDYIGVV 240 AHKYPYWNRS KGADHFMASC HDWAPEISVG KPELFRNFIR VLCNANTSEG FQPKRDVPLP 300 EIFVPTGKLG PPNLGQAPNN RQILAFFAGR VHGPIRPILL EHWKDKDNEV RVHEKLPKGM 360 NYTKLMGQSK FCLCPSGFEV ASPRVVEALY AGCVPVLISD NYSLPFSDVL DWSQFSIQVP 420 VAKIPEIKTI LQAIPNEEYL KMQRRVLKVQ RHFVLNKPAK PFDVIHMDLT PKIFIQNQQL 480 GSPPPMDGSP PPMVPIKKKE KSVLEKKEEG LAEARAAIYK AARSRNYTSD KEESYIPRGN 540 IYRNAYAFHQ FSTFNLSSSI VLQLKSKIEM SHIEMMKRFK VWTYKEGQLP LTHVGPMDCI 600 YSIEGHFIDE MGNGKSPFMA QHHHEAHAYF IPVSVVNIVK YIYMPVTDWH RRRMVRVVKD 660 YVNLIADRYP HWNRSKGADH FMLSCHDWAP GVTKDDPELY ENFMRVLCNA NTSEGFKPMR 720 DISVPEYNIL DKEKLNSFTL GQPPSNRSIL GFFAGGKAHG DIRPLLFEHW ENKDDEILVY 780 EKVPDYNKMM EQSKFCLCPS GWEVASPRII ESLQAGCVPM IISDNYTLPF NDVLDWSKFS 840 MFIPSSRIPE IKTILKGVSD KQYMKMQRRV MKVRMHFEIN RPAKPFDAIH MVLHSVWIRR 900 LNLKLGFWDS WQYACEEKYH GSMNEGTHRL GELDLAFLSA YTIRMYFAGH VGDRIDLRLF 960 LAYGMLGSAV LTCVFQVIGA MCICSEQLFE VEAVAARMTA LWLFLMAWGC NQTRRRELII 1020 QVTDELLMTY QRT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-53 | 575 | 858 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
pfam03016 | Exostosin | 2.0e-64 | 147 | 434 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |