y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10011050m |
Family | GH28 |
Protein Properties | Length: 466 Molecular Weight: 51255 Isoelectric Point: 10.0405 |
Chromosome | Chromosome/Scaffold: 16 Start: 3299594 End: 3301629 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 276 | 426 | 1.1e-29 |
KHLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLINTESAIRVKTAAGRGAYVKDIFARRFTMKTMKYVFWMNGNYDSHPDEGYDPKALPEVSNIN FRDMTAENVTMSASLDGIEKDPFTGVCISNVTIDLSAKPKKLQWNCTNVAG | |||
GH28 | 73 | 238 | 1e-37 |
QMASDGGAQLVVPPGKWLTGSFNLTSHFTLFIQQGATILASQDESEWPVIGPLPSYGKGRDGTGTGRFNSLISGSNLTDVVITGNNGTINGQGQYWWDKF KKKQFNVTRPYLIELLFSKNIQISNITLIDSPSWNIHPVYCNNVIVKSVTVLAPVTVPNTDGINPV |
Full Sequence |
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Protein Sequence Length: 466 Download |
MIRLVFDILV ILATFRFPAI ESRSHRNVAT SGIELSALNC RKHSALLTDF GGVGDGKTSN 60 TKAFTNAISK LSQMASDGGA QLVVPPGKWL TGSFNLTSHF TLFIQQGATI LASQDESEWP 120 VIGPLPSYGK GRDGTGTGRF NSLISGSNLT DVVITGNNGT INGQGQYWWD KFKKKQFNVT 180 RPYLIELLFS KNIQISNITL IDSPSWNIHP VYCNNVIVKS VTVLAPVTVP NTDGINPVRF 240 LHKHTDRGLL HSLRRRLHRR EKRLGPIRNQ FGMPTKHLSI RRLTCISPKS AGVALGSEMS 300 GGIKDVRIED VTLINTESAI RVKTAAGRGA YVKDIFARRF TMKTMKYVFW MNGNYDSHPD 360 EGYDPKALPE VSNINFRDMT AENVTMSASL DGIEKDPFTG VCISNVTIDL SAKPKKLQWN 420 CTNVAGVTSR VKPEPCSLLP EKNADCMFPS DLIPIESVVL KKCTL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-11 | 49 | 436 | 413 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-12 | 47 | 462 | 444 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-13 | 80 | 424 | 358 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-16 | 47 | 408 | 379 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 8.0e-32 | 47 | 343 | 329 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC63679.1 | 0 | 1 | 464 | 1 | 465 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | ABK28510.1 | 0 | 1 | 464 | 12 | 476 | unknown [Arabidopsis thaliana] |
RefSeq | NP_179968.2 | 0 | 1 | 464 | 12 | 476 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_190464.1 | 0 | 1 | 465 | 1 | 469 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002327490.1 | 0 | 28 | 464 | 15 | 449 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-36 | 47 | 409 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-36 | 47 | 409 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-36 | 47 | 409 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-36 | 47 | 409 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000003 | 89 | 382 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |