Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29904.m002994 |
Family | PL1 |
Protein Properties | Length: 376 Molecular Weight: 41942.9 Isoelectric Point: 6.4184 |
Chromosome | Chromosome/Scaffold: 29904 Start: 750652 End: 755301 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 165 | 360 | 0 |
IQDEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVD HNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPX |
Full Sequence |
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Protein Sequence Length: 376 Download |
MAMEVSNSKW FCLCTAVLVV MLVGVFATAR NDGFSGFLRN IVETEHLESS NNSSMAASGE 60 EIEEWKNEHA VDDPEEVVAM VEMSIRNSTE RRKLGYFSCG TGNPIDDCWR CDPNWQKNRK 120 RLADCGIGFG RNAIGGRDGR FYVVTDAGDD DPVNPKPGTL RHAVIQDEPL WIVFKRDMVI 180 QLKQELIMNS FKTIDGRGAN VHIANGACIT IQFVTNVIIH GLHIHDCKPT GNAMVRSSPS 240 HYGWRTMADG DAISIFGSSH IWVDHNSLSH CADGLVDAVM GSTAITISNN HLTHHNEVML 300 LGHSDSYTRD KQMQVTIAYN HFGEGLIQRM PRCRHGYFHV VNNDYTHWEM YAIGGSANPX 360 XSIVRAIDIM HQLTLC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 190 | 354 | 175 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-66 | 183 | 359 | 199 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-75 | 177 | 359 | 194 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADD62392.1 | 0 | 44 | 359 | 38 | 353 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 44 | 359 | 18 | 333 | pectate lyase [Prunus persica] |
RefSeq | XP_002285639.1 | 0 | 3 | 359 | 1 | 340 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 9 | 359 | 6 | 358 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518146.1 | 0 | 1 | 376 | 1 | 376 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 103 | 359 | 2 | 259 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 103 | 359 | 2 | 259 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 172 | 367 | 50 | 235 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000004 | 181 | 345 | 119 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000002 | 181 | 345 | 71 | 246 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |