| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_14.39 |
| Family | PL1 |
| Protein Properties | Length: 477 Molecular Weight: 54110.8 Isoelectric Point: 9.7547 |
| Chromosome | Chromosome/Scaffold: 14 Start: 414180 End: 416273 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 192 | 393 | 0 |
| PLWIIFKRDMHIRLSQELMINSHKTIDARGTNIHIAYGAGITIHSVKNVIIHGLHIHHIVGSPGGLIRDSVAHFGIRTASDGDGINIYASSNVWLDHLSM SRCQDGLIDAIQGSTAITISNCHFTHHNDVILLGASDSYKGDKIMQVTVAYNHFGKGLVQRMPRCRWGFFHVVNNDYTHWEMYAIGGSMNPTILSQGNRF IA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 477 Download |
| MEKVRLCLLF LFSFASLIQS LLADTEMFDD YWEKRAEESR KDALEAYHPN PYDIVDHFHL 60 PTNMSSEIEM EEEEESDRGS LEGKSRGNKF SISANMSSDM EQESLRRSLA GRGRGKKHLG 120 PCRVTNPIDK CWRCRRNWAR NRKKLATCVR GFAHRTRGGM RGRIYVVTSN KDDNVVNPKP 180 GTLRYGVIQT EPLWIIFKRD MHIRLSQELM INSHKTIDAR GTNIHIAYGA GITIHSVKNV 240 IIHGLHIHHI VGSPGGLIRD SVAHFGIRTA SDGDGINIYA SSNVWLDHLS MSRCQDGLID 300 AIQGSTAITI SNCHFTHHND VILLGASDSY KGDKIMQVTV AYNHFGKGLV QRMPRCRWGF 360 FHVVNNDYTH WEMYAIGGSM NPTILSQGNR FIAPPHKPFS KEVTKRDYAT PDKWKKWIWK 420 SEKDVMMNGA FFVQSGNPKY KPPYSRKDII RAKHGVAASL LTRYAGSLDC YRGKPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 2.0e-12 | 28 | 59 | 32 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 3.0e-22 | 208 | 467 | 284 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-59 | 207 | 391 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-68 | 200 | 395 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM60924.1 | 0 | 1 | 476 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | ABK28696.1 | 0 | 1 | 476 | 1 | 472 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_186776.1 | 0 | 1 | 476 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197015.4 | 0 | 1 | 476 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
| Swiss-Prot | Q9LFP5 | 0 | 1 | 476 | 1 | 472 | PEL19_ARATH RecName: Full=Putative pectate lyase 19; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 126 | 466 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 126 | 466 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 8e-18 | 207 | 393 | 62 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.000000000001 | 207 | 391 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.000000000001 | 209 | 391 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CO103662 | 290 | 154 | 443 | 0 |
| GR462190 | 274 | 167 | 440 | 0 |
| GR459087 | 271 | 151 | 421 | 0 |
| GR462449 | 261 | 169 | 429 | 0 |
| GR458008 | 252 | 158 | 409 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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