y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_152.39 |
Family | PL1 |
Protein Properties | Length: 384 Molecular Weight: 42309.6 Isoelectric Point: 8.9221 |
Chromosome | Chromosome/Scaffold: 152 Start: 287529 End: 289308 |
Description | root hair specific 14 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 114 | 316 | 0 |
PLWIIFSRDMVITLKNELIVNSYKTIDGRGARVEISNGPCITIQYVSHVIIHGISIHHCKPGKAGMVRSSTSHVGRRRGSDGDGISIFGSSNIWIDHCFI SHCTDGLIDIIHASTAITISNNYMTDHDKVMLLGHSDGYSADKAMKVTIVFNHFGLGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSANPTIFSEGNHF IAP |
Full Sequence |
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Protein Sequence Length: 384 Download |
MASQTSLLLI LSCLFPCFAL TFQANYSPKT YINKPLSSYL PSTTKKVMNV IDSCWRTKSN 60 WITNRQALAD CAVGFGKSAM GGKNGAIYIV TSPADDPANP KPGTLRYGVI QTKPLWIIFS 120 RDMVITLKNE LIVNSYKTID GRGARVEISN GPCITIQYVS HVIIHGISIH HCKPGKAGMV 180 RSSTSHVGRR RGSDGDGISI FGSSNIWIDH CFISHCTDGL IDIIHASTAI TISNNYMTDH 240 DKVMLLGHSD GYSADKAMKV TIVFNHFGLG LIERMPRVRF GYAHVANNRY DEWQMYAIGG 300 SANPTIFSEG NHFIAPNNPD SKERLEVGRN GNGEHQRMCL DGAFFVPSDC KTVPSLSFIF 360 GLSLSFSTIH PKFTSFIYIY ILF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-24 | 205 | 321 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-50 | 128 | 313 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-61 | 122 | 317 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23207.1 | 0 | 48 | 358 | 1 | 317 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263615.1 | 0 | 5 | 375 | 4 | 384 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 1 | 348 | 1 | 352 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 375 | 1 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 34 | 375 | 29 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 49 | 323 | 2 | 278 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 49 | 323 | 2 | 278 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-19 | 67 | 315 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 6e-16 | 131 | 313 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000003 | 196 | 291 | 205 | 317 | A Chain A, Bacillus Subtilis Pectate Lyase |