y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr6g021950.1 |
Family | PL1 |
Protein Properties | Length: 405 Molecular Weight: 44917.2 Isoelectric Point: 6.6465 |
Chromosome | Chromosome/Scaffold: 6 Start: 4825330 End: 4828825 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 125 | 323 | 0 |
IIFKRDMVIQLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNVIIHGIHVHDCVPTGNTNIRDSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNC RDGLIDVIHGSNAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 405 Download |
MTFLSYFLIL FALLIPNFVS SSSVQDPELV VQDVQRSINV SRSRRNLGYL SCGTGNPIDD 60 CWRCDPNWEN NRQRLADCAI GFGKDAIGGK NGKIYIVTDS GDDDAVNPKP GTLRYGAIQD 120 EPLWIIFKRD MVIQLKQELL VNSYKTIDGR GASVHIANGG CITIHYVNNV IIHGIHVHDC 180 VPTGNTNIRD SPEHSGFWTV SDGDGISVFN SQHIWIDHCS LSNCRDGLID VIHGSNAITI 240 SNNYMTHHDK VMLLGHSDSY TQDKDMQVTI AFNHFGEGLV QRMPRCRHGY FHVVNNDYTH 300 WEMYAIGGSA NPTINSQGNR FLAPDNRFSK EVTKHEDASE SEYNSWNWRS EGDLFLNGAF 360 FRQTGAESSS IYARASSLSA RPASLVGSIT TTSGVLTCKK GNRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-29 | 136 | 321 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-74 | 136 | 321 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-80 | 130 | 325 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV32549.1 | 0 | 16 | 404 | 24 | 413 | pectase lyase [Prunus persica] |
GenBank | ACK38190.1 | 0 | 1 | 328 | 1 | 328 | unknown [Medicago truncatula] |
GenBank | ACU21247.1 | 0 | 16 | 404 | 18 | 406 | unknown [Glycine max] |
RefSeq | XP_002300069.1 | 0 | 1 | 404 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 4 | 404 | 5 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 56 | 397 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 56 | 397 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-22 | 125 | 323 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 4e-16 | 134 | 330 | 78 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 4e-16 | 134 | 330 | 78 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |