Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F02050.1 |
Family | PL1 |
Protein Properties | Length: 398 Molecular Weight: 43793.2 Isoelectric Point: 5.9103 |
Chromosome | Chromosome/Scaffold: 6 Start: 27446561 End: 27448471 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 117 | 316 | 0 |
IIFDHDMVINLEQELVMNSYKTIDGRGQNIQISNGPCITIQNVSNIIIHNIYIHDCLPAGNALVRNSPQLVGMRGKSDGDGISIYASHDIWIDHCTLASC SDGLIDAVIGSTAMTISNNYMLHHNEVMLMGHSDDYVDDKNMQVTIAFNFFGEGLVQRMPRCRHGYFHIVNNVYAGWEMYAIGGSANPTINSQGNVFIAS |
Full Sequence |
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Protein Sequence Length: 398 Download |
MSSLCIFALA MLHVVTHTSS ARSMMRTPEM AEWNTTRRQL GTGSCRTGNP TDDCWRCDPD 60 WESNRKDLAD CAIGFGRNAV GGRDGKIYVV TKSSDDAVNP PPGTLRYGVI QDEPLWIIFD 120 HDMVINLEQE LVMNSYKTID GRGQNIQISN GPCITIQNVS NIIIHNIYIH DCLPAGNALV 180 RNSPQLVGMR GKSDGDGISI YASHDIWIDH CTLASCSDGL IDAVIGSTAM TISNNYMLHH 240 NEVMLMGHSD DYVDDKNMQV TIAFNFFGEG LVQRMPRCRH GYFHIVNNVY AGWEMYAIGG 300 SANPTINSQG NVFIASNSDR TKEVTKRENT AGNSEWKNWN WRSDRDLMLN GAFFTPSGEN 360 SASSYLKASS MVARPASLLT TKDPSAGALN CQIGEQC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-28 | 135 | 313 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-67 | 129 | 313 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-76 | 122 | 317 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI39737.1 | 0 | 68 | 397 | 2 | 332 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200383.1 | 0 | 1 | 397 | 1 | 392 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265729.1 | 0 | 1 | 397 | 1 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317359.1 | 0 | 35 | 397 | 4 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522747.1 | 0 | 1 | 397 | 1 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 49 | 359 | 2 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 49 | 359 | 2 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-18 | 117 | 315 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.00000000000004 | 130 | 317 | 75 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1pe9_B | 0.0000000000001 | 138 | 329 | 90 | 305 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |