Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.011G093400.2 |
Family | PL1 |
Protein Properties | Length: 399 Molecular Weight: 44421.9 Isoelectric Point: 5.8463 |
Chromosome | Chromosome/Scaffold: 11 Start: 11335585 End: 11337692 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 118 | 316 | 0 |
IIFDQDMVINLKEELIMNSHKTIDGRGHNIQIADGPCITIQNVSNIIIHNIYIHGCVPGGNAIVRDSTKHYGLRGNSDGDGISIFAARDVWIDHCTLANC HDGLIDAVFGSTSITISNNYMFNHNEVMLMGHSDDFLDDKNMQVTIAFNFFGENLVQRMPRCRHGYFHIVNNIYTGWEKYAIGGSADPTINSQGNVFMA |
Full Sequence |
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Protein Sequence Length: 399 Download |
MPPFSLFFLV LISHATITFS RHPLLRISEA TKWSSTRRQL GNDACRTGNP IDDCWRCDPD 60 WETNRKVLAD CAIGFGRNAV GGRDGNLYVV TNSDNDDPVN PIPGTLRYGV IQEEPLWIIF 120 DQDMVINLKE ELIMNSHKTI DGRGHNIQIA DGPCITIQNV SNIIIHNIYI HGCVPGGNAI 180 VRDSTKHYGL RGNSDGDGIS IFAARDVWID HCTLANCHDG LIDAVFGSTS ITISNNYMFN 240 HNEVMLMGHS DDFLDDKNMQ VTIAFNFFGE NLVQRMPRCR HGYFHIVNNI YTGWEKYAIG 300 GSADPTINSQ GNVFMALDNS DTKEVTWHES LTGFEEWKSW NWRSDGDMML NGAFFTPSGQ 360 KSSASYIKAS SMVARPASYL TNMSPQAGAL NCQKGYQC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.009 | 154 | 242 | 93 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 5.0e-29 | 136 | 321 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-64 | 129 | 314 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-72 | 123 | 318 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF19195.1 | 0 | 1 | 398 | 1 | 407 | AF206319_1 pectate lyase 1 [Musa acuminata AAA Group] |
EMBL | CBI39737.1 | 0 | 67 | 398 | 1 | 332 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265729.1 | 0 | 1 | 398 | 1 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317359.1 | 0 | 34 | 398 | 3 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522747.1 | 0 | 1 | 398 | 1 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 49 | 360 | 2 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 49 | 360 | 2 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-18 | 68 | 316 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000001 | 74 | 359 | 22 | 325 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000001 | 74 | 359 | 22 | 325 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |