| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a023431m |
| Family | PL1 |
| Protein Properties | Length: 401 Molecular Weight: 44472.2 Isoelectric Point: 8.0945 |
| Chromosome | Chromosome/Scaffold: 22 Start: 1106925 End: 1108843 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 123 | 321 | 0 |
| IIFRADMVIKLKQELVVNSHKTIDGRGATVHIAGGACVTIHHATNVILHGIHIHDCVKAGNAVIRDSPRHAGWWEESDGDGVAIFGGRDIWIDHCSLSNC ADGLIDAIHGSTGITISNNYFTNHDKVMLLGHNDGYVQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 401 Download |
| MSQLLLFLLI LITLATPILV SSFRHDPDIT VREVQQSINA SRRNLGYISC STGNPIDDCW 60 RCDPNWETRR RRLADCAIGF GKKAVGGRDG RTYVVTDSGN DDPVNPKPGT LRHAAIQFEP 120 LWIIFRADMV IKLKQELVVN SHKTIDGRGA TVHIAGGACV TIHHATNVIL HGIHIHDCVK 180 AGNAVIRDSP RHAGWWEESD GDGVAIFGGR DIWIDHCSLS NCADGLIDAI HGSTGITISN 240 NYFTNHDKVM LLGHNDGYVQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWE 300 MYAIGGSASP TIYSQGNRFL APNLRFRKEV TKHEDAPESE WRRWNWRSEG DLMLNGAYFQ 360 QSGTGSTYAR ASSLSARPYS LVGTITTSAG ALNCRKGTRC * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12708 | Pectate_lyase_3 | 0.003 | 144 | 249 | 107 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| COG3866 | PelB | 3.0e-30 | 134 | 319 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-73 | 134 | 319 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-79 | 128 | 323 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF63756.1 | 0 | 14 | 400 | 14 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
| GenBank | ADB90475.1 | 0 | 25 | 400 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
| RefSeq | XP_002300069.1 | 0 | 1 | 400 | 1 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322215.1 | 0 | 16 | 400 | 16 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526952.1 | 0 | 2 | 400 | 3 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 54 | 363 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 54 | 363 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-19 | 123 | 321 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 2e-16 | 126 | 331 | 133 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 5e-16 | 126 | 331 | 133 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
