| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.167020.1 |
| Family | GH28 |
| Protein Properties | Length: 357 Molecular Weight: 38586.4 Isoelectric Point: 9.3417 |
| Chromosome | Chromosome/Scaffold: 01154 Start: 392089 End: 393594 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 7 | 336 | 0 |
| NDACASVRPSAVVIPRGIFKVREGEFKGPCKSPIEIRVRGTLQAPKHPYGDSWITFAYVDRMKLSGGGVFDGQGKAGWEKNDCHKHKNCANLPISLRFNF VTNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPGDSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGSKRIKVNNVTCGPGHGISIGSLGKYTN EEPVEDVIVKNCTIINTTNGVRIKTWPTSPAAGIATNMHFSDITMVNVSNPIVIDQEYCPWNQCNRKIPSNIKINKVSFKNIRGSSATPVAVKLICSSNL PCEEVKLSNIDLIYNGIKGSITSQCMNVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 357 Download |
| ALKDAWNDAC ASVRPSAVVI PRGIFKVREG EFKGPCKSPI EIRVRGTLQA PKHPYGDSWI 60 TFAYVDRMKL SGGGVFDGQG KAGWEKNDCH KHKNCANLPI SLRFNFVTNS IVRRITSLDS 120 KNFHVNILGC NNLTFQGVNI IAPGDSPNTD GIHIGRSIGI SILKSRIATG DDCISLGDGS 180 KRIKVNNVTC GPGHGISIGS LGKYTNEEPV EDVIVKNCTI INTTNGVRIK TWPTSPAAGI 240 ATNMHFSDIT MVNVSNPIVI DQEYCPWNQC NRKIPSNIKI NKVSFKNIRG SSATPVAVKL 300 ICSSNLPCEE VKLSNIDLIY NGIKGSITSQ CMNVKPIIYG IQNPPICSSS YTIASK* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-66 | 1 | 344 | 353 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 6.0e-79 | 1 | 347 | 353 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-79 | 1 | 350 | 359 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-105 | 10 | 335 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-119 | 1 | 347 | 349 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 1 | 347 | 45 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 347 | 45 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 347 | 45 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 1 | 347 | 45 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 1 | 347 | 45 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 57 | 318 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 2e-18 | 9 | 334 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-18 | 9 | 334 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-18 | 9 | 334 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-18 | 9 | 334 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR462194 | 275 | 57 | 331 | 0 |
| GR463354 | 277 | 76 | 352 | 0 |
| EY196848 | 271 | 75 | 345 | 0 |
| EX164190 | 271 | 75 | 345 | 0 |
| GR458186 | 269 | 37 | 303 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
