Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000273194 |
Family | GH28 |
Protein Properties | Length: 273 Molecular Weight: 29599.9 Isoelectric Point: 6.5056 |
Chromosome | Chromosome/Scaffold: 002815384 Start: 686 End: 1649 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 35 | 267 | 0 |
GSIEIQVQGKLTAPVDGDKLTRPETWVGFEHVNKLTVSRGGTFDGQGALAWKKNDCNENKDCKSIAINMRFNFVTNSTIQDITSLDIKNFHVNILGCHNV TFQRVNVTAPGESINTDGIHIERSTGINITDAHTGTGEDCVSIGNGNKESTITRVTCGPGHGISIGSLGRYSNEEPVVGNRVTNRTLTNTSNGVRIKTWS ASPSDGIATDMHXEDIIMVNVNNSVLIDQQYSR |
Full Sequence |
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Protein Sequence Length: 273 Download |
MAWKLNFLAA FLFLLSAAKT QAEPVVVDVT IATYGSIEIQ VQGKLTAPVD GDKLTRPETW 60 VGFEHVNKLT VSRGGTFDGQ GALAWKKNDC NENKDCKSIA INMRFNFVTN STIQDITSLD 120 IKNFHVNILG CHNVTFQRVN VTAPGESINT DGIHIERSTG INITDAHTGT GEDCVSIGNG 180 NKESTITRVT CGPGHGISIG SLGRYSNEEP VVGNRVTNRT LTNTSNGVRI KTWSASPSDG 240 IATDMHXEDI IMVNVNNSVL IDQQYSRGNS VFH |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-43 | 37 | 265 | 232 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-44 | 37 | 269 | 233 | + polygalacturonase | ||
PLN03010 | PLN03010 | 5.0e-45 | 36 | 265 | 232 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-66 | 35 | 269 | 235 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-75 | 43 | 265 | 223 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 36 | 269 | 83 | 314 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 36 | 269 | 83 | 314 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 36 | 269 | 83 | 314 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 36 | 269 | 83 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333303.1 | 0 | 36 | 269 | 83 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.00000000004 | 69 | 269 | 72 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000004 | 69 | 269 | 72 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000004 | 69 | 269 | 72 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000004 | 69 | 269 | 72 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.00000000004 | 69 | 269 | 72 | 269 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |