y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10004345m |
Family | GH28 |
Protein Properties | Length: 806 Molecular Weight: 85542.3 Isoelectric Point: 5.5886 |
Chromosome | Chromosome/Scaffold: 9 Start: 1400946 End: 1405247 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 90 | 360 | 0 |
FEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQR LPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGIS VGSLGKYDNEADVKGIIVKDCTLVGTQNGLRIKTYEGKSESRASSMIFQDIVMKDVKHPIIIDQFYGGKDK | |||
GH28 | 455 | 780 | 0 |
NAACSHNGDSTFYIPEGTFLLGPVSITGPCHNNQPPKIVIKGTLMAPPNLSAFPDTNWIVFQDLHGINISGGNGEVPNIDAQGEVEAWKRNSCSKSEKCN KLITSLRFNNVSHGTISNIAVSNSKGFHVAFLDCDNINVYNVSISSPGDSPNTDGIHVGMSTNINITSSNIGAGDDCISIGPGSSNISVADVKCGPGHGI SIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASRASNLMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVELSNIHFKNISGTYNTES GVTLICSSGVPCENIHLIDINLNPTE |
Full Sequence |
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Protein Sequence Length: 806 Download |
MAIAKRACTS IAAISLLLCY SAVVSCEVTT GEATGEFNVS AANARANAIN RGILDPTAKV 60 FNVLQFGAKP GDKEDRHNID SNHMAFVKAF EAACHHEGKA RLVIPRGTFV LGPVTFMGPC 120 NNTPLIVQIQ GTIKAITDIS EFPGQGEEWV NFQNINGLVV TGSGTFDGQG ASCWKYRDTK 180 NDNNVPGQRL PANIQFVEVS NAIVRGITSV NSKGFHYFIT GCKNIRLYHL NIIAPDESPN 240 TDGIHISQSD VVKIAKSYIG TGDDCVGMIR GSSNVSVKKV TCGPGHGISV GSLGKYDNEA 300 DVKGIIVKDC TLVGTQNGLR IKTYEGKSES RASSMIFQDI VMKDVKHPII IDQFYGGKDK 360 KMVALGMSSS VACLSFLYIT SVLSASWQPT PAPKPNSPVS SPNPEAKSPD PSPATADSPE 420 TQLPPTAEGL FDVTDYGAEP DGETETSSPF LEAWNAACSH NGDSTFYIPE GTFLLGPVSI 480 TGPCHNNQPP KIVIKGTLMA PPNLSAFPDT NWIVFQDLHG INISGGNGEV PNIDAQGEVE 540 AWKRNSCSKS EKCNKLITSL RFNNVSHGTI SNIAVSNSKG FHVAFLDCDN INVYNVSISS 600 PGDSPNTDGI HVGMSTNINI TSSNIGAGDD CISIGPGSSN ISVADVKCGP GHGISIGSLG 660 KYTDEEDVVG INVRNCTITG TQNGVRVKTW PGAPASRASN LMFTDIVMIN VSNPIIIDQE 720 YCPSNSCKST SEPSLVELSN IHFKNISGTY NTESGVTLIC SSGVPCENIH LIDINLNPTE 780 PETPREGRFN VKGVVNGLEI LNSSF* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-69 | 94 | 355 | 262 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-85 | 433 | 776 | 348 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-93 | 458 | 776 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-98 | 61 | 355 | 296 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02188 | PLN02188 | 9.0e-115 | 430 | 776 | 349 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN65676.1 | 0 | 225 | 782 | 1 | 560 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 58 | 355 | 29 | 321 | unnamed protein product [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 415 | 805 | 16 | 405 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 58 | 355 | 68 | 360 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 415 | 805 | 55 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 533 | 747 | 119 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1bhe_A | 7e-17 | 160 | 359 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.000000000000001 | 432 | 776 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.0002 | 59 | 355 | 19 | 284 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000000002 | 521 | 783 | 70 | 326 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |